Detailed project planning for cleaning an urban river system in Zimbabwe.

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I am a solar pump engineer with a very basic understanding (from a long forgotten university course) on how to test for river water quality, how should the samples be collected etc. 

I have been contacted by a community of urban farmers who want to clean their local water source in Harare. I need your professional help in this regard.

I'd be extremely grateful to river restoration professionals for giving me inputs on methodology, reference sites, hints, or tips on this topic.